Cancer Databases and Browser

MeSH Browser 2015

National Cancer Institute

OMIM: an online catalog of human genes and genetic disorders.

NCDB: a clinical oncology database sourced from hospital registry data.

TCGA: a project to catalogue genetic mutations responsible for cancer, using genome sequencing and bioinformatics.

ICGC: a voluntary scientific organization that provides a forum for collaboration among the world's leading cancer and genomic researchers.

Cancer Genes Database

COSMIC:a database of somatically acquired mutations found in human cancer.

DriverDB: an exome sequencing database for cancer driver gene identification.

Network of Cancer Gene: a manually curated repository of cancer genes derived from the scientific literature.

CanSAR: a publicly available, multidisciplinary, cancer-focused knowledgebase developed to support cancer translational research and drug discovery.

intOGen:a mutational cancer drivers database.

Tumore Associated Gene Database: a database of cancer genes identified through text-mining approach from the PubMed database

LncRNA Databases and Browser

LncRNAdb: the Reference Database For Functional Long Noncoding RNAs.

NONCODE: a database of all kinds of noncoding RNAs (except tRNAs and rRNAs).

The RNA World Website: a collection of links to RNA-related information.

LNCipedia: a database for annotated human lncRNA transcript sequences and structures.

LncRNome: a comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs.

lnc2cancer: a manually curated database that provides comprehensive experimentally supported associations between lncRNA and human cancer.

LncRNADisease: a database that curated the experimentally supported lncRNA-disease association data.

MiTranscriptome: a catalog of human long poly-adenylated RNA transcripts derived from computational analysis of high-throughput RNA sequencing (RNA-Seq) data from over 6,500 samples spanning diverse cancer and tissue types.

TANRIC: An open-access resource for interactive exploration of lncRNAs in cancer.

Mutations and Browser

COSMIC: a database of somatically acquired mutations found in human cancer.

Copy Number Variants Databases and Browser

CNVD: is a systematic and comprehensive database for copy number variations and related diseases

Drug-gene interaction Databases and Browser

DGIdb: The Drug Gene Interaction Database

intOGen: a mutational cancer drivers database



Ensembl: provide genome databases for vertebrates and other eukaryotic species.

HGNC: a curated online repository of HGNC-approved gene nomenclature, gene families.

GAD: a Genetic Association Database.

Copyright © 2016 Lu Lab, School of Life Sciences, Tsinghua University, China