RBPome RBPome

An integrative resource of CLIP-seq studies

August, 2016.

45 data sets added on August, 2016.
Arabidopsis thaliana: 2 data sets
Fly: 11 data sets
Worm: 6 data sets
Yeast: 27 data sets

July, 2016.

17 data sets added on July, 2016.
Human:
  • Factor: METTL14      Dataset: GSM1135008,GSM1135009,GSM1135014,GSM1135015
  • Factor: METTL3      Dataset: GSM1135006,GSM1135007,GSM1135012,GSM1135013
  • Factor: RBM10      Dataset: GSM1095142,GSM1095143
  • Factor: RBM47      Dataset: GSM1409655,GSM1409656
  • Mouse:
  • Factor: PABPC1      Dataset: GSM1708284,GSM1708285,GSM1708286
  • Factor: RBFOX2      Dataset: GSM1324104,GSM1324105

  • April , 2015.

    17 data sets added on April, 2015.
    Human:
  • Factor: SRRM4      Dataset: GSM1378374,GSM1378375,GSM1378376,GSM1486179
  • Factor: PTBP1      Dataset: GSM1378377,GSM1486177,GSM1486178
  • Factor: HNRNPD      Dataset: GSM1279664,GSM1279665,GSM1279666,GSM1279667
  • Factor: U2AF2      Dataset: GSM1378379
  • Factor: WDR33      Dataset: GSM1496985
  • Mouse:
  • Factor: SRRM4      Dataset: GSM1486174,GSM1486175,GSM1486176
  • Factor: RBFOX3      Dataset: SRX375262

  • December , 2014.

    8 human HITS-CLIP data sets added on December 15, 2014.
     
  • Factor: FUS      Dataset: DRA001158-DRS012384
  • Factor: TARDBP      Dataset: DRA001158-DRS012385
  • Factor: TARDBP      Dataset: DRA001158-DRS012386
  • Factor: TARDBP      Dataset: DRA001158-DRS012387
  • Factor: ATXN2      Dataset: DRA001158-DRS012388
  • Factor: ATXN2      Dataset: DRA001158-DRS012389
  • Factor: ATXN2      Dataset: DRA001158-DRS012390
  • Factor: ATXN2      Dataset: DRA001158-DRS012391

  • Reference: Yokoshi at al .2014. Direct binding of Ataxin-2 to distinct elements in 3' UTRs promotes mRNA stability and protein expression. Mol Cell. 2014 Jul 17;55(2):186-98.

    September , 2014.

    CLIPdb 1.0 release in September 15, 2014.
         1. Includes 395 CLIP-seq data sets.
         2. Covers 111 RNA binding proteins.
         3. Across Four species (human, mouse, worm and yeast).
         4. Provides (i) querying CLIP studies and RBP information, (ii) download and visualization of binding sites, (iii) searching binding sites for a given gene.