POSTAR2

Lu Lab

We move

CLIPdb

here and keep updating it.

Species:
RBP name:













Example
1. You can select a species: Human
2. You can select a RBP Gene Symbol: TAF15


Download
1. You can download the data from this page.


Contact
Email: postar_lulab AT 163.com


References
1. Piranha: Uren P.J. et al. Site identification in high-throughput RNA-protein interaction data. Bioinformatics 28, 3013-20 (2012).
2. PARalyzer (PAR-CLIP): Corcoran D.L. et al. PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data. Genome Biol 12, R79 (2011).
3. CIMS (HITS-CLIP): Moore M. et al. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis. Nat Protoc 9, 263-93 (2014).
4. CITS (iCLIP): Weyn-Vanhentenryck S.M. et al. HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism. Cell Rep 6, 1139-52 (2014).
5. ENCODE eCLIP: Van Nostrand E.L. et al. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP). Nat Methods (2016).
6. RNAcontext: Kazan H et al. RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins. PLoS Comput Biol (2010).
7. RNApromo:Rabani M et al. Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes. Proc Natl Acad Sci U S A. (2008).
8. Pfam:Finn RD et al. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res. (2016).
9. AmiGO 2:Seth Carbon et al. AmiGO: online access to ontology and annotation data Bioinformatics. (2009).