Skip to content

Panel and Database

0. Databases

  • 2024 NAR - cfOmics: a cell-free multi-Omics database for diseases
  • 2021 NAR - exoRBase 2.0: an atlas of mRNA, lncRNA and circRNA in extracellular vesicles from human biofluids
  • 2020 NAR - Vesiclepedia 2019: a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles
  • 2020 NAR - CFEA a cell-free epigenome atlas in human disease
  • 2019 NAR - BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers

I. NGS Analysis

RNA-seq Analysis - Differential Expression

  • 2021 Theranostics - Integrative analysis of long extracellular RNAs reveals a detection panel of noncoding RNAs for liver cancer
  • circRNA: 2020 PLOS Comp. Bio. - seekCRIT: Detecting and characterizing differentially expressed circular RNAs using high-throughput sequencing data

RNA-seq Analysis - More

II. Meta-Analysis

  • [Protein markers] 2016 Lancet Neurol - CSF and blood biomarkers for the diagnosis of Alzheimer's disease- a systematic review and meta-analysis
  • [DNA markers] 2014 Nat Genetics - Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk
  • [lncRNA markers] 2005 Cancer Res. - Identification of GATA3 as a Breast Cancer Prognostic Marker by Global Gene Expression Meta-analysis
  • [Practical Review] 2015 Korean J Radiol Systematic Review and Meta-Analysis of Studies Evaluating Diagnostic Test Accuracy: A Practical Review for Clinical Researchers
  • Part I. General Guidance and Tips
  • Part II. Statistical Methods of Meta-Analysis

III. Large-cohort Validation/Screen

cfRNA Panels

  • 2022 Mol Cancer - A signature of saliva-derived exosomal small RNAs as predicting biomarker for esophageal carcinoma: a multicenter prospective study
  • ✨ miRNA panel: 2022 Mol Cancer - A microRNA-based liquid biopsy signature for the early detection of esophageal squamous cell carcinoma: a retrospective, prospective and multicenter study
  • ✨ circRNA panel: 2022 Mol Cancer - Diagnostic efcacy of circular RNAs as noninvasive liquid biopsy biomarkers for early detection of gastric cancer
  • ✨ mRNA panel: 2021 Mol Cancer - Circulating exosomal mRNA profiling identifies novel signatures for the detection of prostate cancer
  • lncRNAs+miRNAs: 2021 Theranostics -Integrative analysis of long extracellular RNAs reveals a detection panel of noncoding RNAs for liver cancer
  • miRNAs: 2020 Gut - Development and validation of a serum microRNA biomarker panel for detecting gastric cancer in a high-risk population
  • miRNAs: 2020 PNAS - Development of a serum miRNA panel for detection of early stage non-small cell lung cancer
  • ✨ small exosomal RNA: 2019 Molecular Cancer - Exosomal tRNA-derived small RNA as a promising biomarker for cancer diagnosis
  • ✨ miRNA7: 2011 JCO - Jia Fan - Plasma MicroRNA Panel to Diagnose Hepatitis B Virus–Related Hepatocellular Carcinoma

Other Detection/Diagnosis Panels

  • ✅ (neoadjuvant biomarker) 2022 Mol. Cancer - A liquid biopsy signature of circulating exosome-derived mRNAs, miRNAs and lncRNAs predict therapeutic efficacy to neoadjuvant chemotherapy in patients with advanced gastric cancer
  • ✅ (SLE biomarker) 2022 Lancet Rheumatol - Identification of biomarkers to stratify response to B-cell-targeted therapies in systemic lupus erythematosus: an exploratory analysis of a randomised controlled trial
  • ctDNA+Protein (CancerSEEK): 2018 - Science - Detection and localization of surgically resectable cancers with a multi-analyte blood test
  • 2019 - iScience - Early Cancer Detection from Multianalyte Blood Test Results
  • 2021 - Bioinformatics - CancerEMC frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA
  • ctDNA+Protein+Clinical Info: 2019 - PNAS - Detection of early-stage hepatocellular carcinoma in asymptomatic HBsAg-seropositive individuals by liquid biopsy

Other Prognosis Panels

  • Progosis ctDNA: 2019 JCO - Early Detection of Metastatic Relapse and Monitoring of Therapeutic Efficacy by Ultra-Deep Sequencing of Plasma Cell-Free DNA in Patients With Urothelial Bladder Carcinoma
  • Prognosis ctDNA: 2019 JAMA Oncology - Analysis of Plasma Cell-Free DNA by Ultradeep Sequencing in Patients With Stages I to III Colorectal Cancer
  • Prognosis ctDNA: 2019 Translational Med. - Personalized circulating tumor DNA analysis to detect residual disease after neoadjuvant therapy in breast cancer
  • Prognosis ctDNA:2019 JAMA Oncology - Circulating Tumor DNA Analyses as Markers of Recurrence Risk and Benefit of Adjuvant Therapy for Stage III Colon Cancer
  • Liquid vs. tissue biopsy: 2019 Nature Medicine - Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers